Collaborative Crop Research Program The McKnight Foundation
 
 

Conservation of rice biodiversity

 
Agrodiversity for in situ conservation of local rice germplasm
in and near its center of diversity

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Project information Topic: Biodiversity
Project impact Topic: Food security
Investigators Topic: Monitoring and evaluation
Annual progress reports Topic: Participatory research
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Project information

»Funding dates

Original grant (2001-2005)
Yr 1: 12/1/2001-11/30/2002

First renewal (2005-2009)
Yr 5: 12/1/2005-11/30/2006

Yr 2: 12/1/2002-11/30/2003

Yr 6: 12/1/2006-11/30/2007

Yr 3: 12/1/2003-11/30/2004

Yr 7: 12/1/2007-11/30/2008

Yr 4: 12/1/2004-11/30/2005

Yr 8: 12/1/2008-11/30/2009


Rice field experiment on iron toxicity.

»The problem
Southeast Asian farmers living in relatively homogeneous rice-growing environments, where controlled irrigation and good access to fertilizer inputs are the norm, have realized tremendous production gains from the introduction of high-yielding rice varieties (HYVs) developed by national and international rice breeding programs. However, irrigation covers only 12% of Cambodia's rice land, 23% in Laos, and less than 30% of Thailand. The majority of rice farmers in these countries live in more highly variable production environments (mountainous uplands, small foot-hill valleys, flood-plains, etc) and have benefited less or not at all from the products of scientific breeding programs. Farmers in these traditional rice cropping systems have preferred to rely on their local, genetically-diverse rice varieties, which they knowledgeably deploy in combination with modern and traditional inputs. In effect, these farmers are now maintaining much of the world's remaining diversity in rice germplasm in their production fields.

Traditional rice cropping systems are also under pressure to increase rice productivity to meet the food and economic needs of rapidly growing populations. However, increased rice productivity in these systems is currently constrained by a host of complex and often interrelated stress factors, including extremes of temperature and/or water-availability, unfavorable soil chemical conditions, and yield loss attributable to key rice pests, such as gall midge, rice blast, and invasive, weedy rice. The previously funded CCRP project, "Agrobiodiversity for in situ conservation and management of Thailand's native rice germplasm" (2001-2005), undertook an in-depth study of the local varieties grown in traditional rice cropping systems across a wide range of environments in Thailand. The project team concluded that (1) improved understanding and management of the tremendous genetic diversity found in farmers' local varieties, combined with some fine-tuning of key agronomic practices, holds the key to increased productivity in these systems and that (2) working with farmers to make strategic improvements in their methods of selecting and transferring seeds amongst themselves is a more effective strategy for meeting farmers' needs and production niches than turning promising varieties into single genotype 'improved' varieties.

»The approach
This project will extend the key findings and capacities built in the previously funded project to similar rice cropping systems in neighboring Cambodia and Lao PDR, as well as in other parts of Thailand that were not reached earlier. Farmers in these new target areas face many of the same production constraints, as well as opportunities for improvement, that were identified during the earlier project, when the research team studied varietal adaptations and improved management practices across a diverse range of production environments. A successful integrated approach to weedy rice control was developed in the first phase of the project and a number of genetic traits were studied in detail, including gall midge resistance, tolerance to blast, tolerance to soil acidity, adaptation to rainfed conditions (alternating wet and dry), association with arbuscular mycorrhizal fungi, grain Fe content and bioavailability, and grain milling and cooking quality. Many findings from the previous project, especially those related to gall midge resistance and weedy rice control, are likely to be directly applicable in Cambodia and Laos. Other locally-important problems and opportunities in the two new target countries have been identified and will be verified during the first year when baseline information is established.

The newly constituted project team, which incorporates new partners in Cambodia and Laos, will continue to take the three-pronged research approach they developed earlier, namely conducting (1) basic research aimed at characterizing the structure and dynamics of genetic diversity found in the cultivated and wild rice populations in the new target areas; (2) adaptive farmer participatory research aimed at evaluating and verifying the potential of various management practices to contribute to improved rice productivity and conservation of local germplasm; and (3) interdisciplinary research aimed at elucidating the complex socio-cultural, economic and biological factors that impact farmers' traditional rice seed systems.

Theme 1
Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. By Jason P. Londo, Yu-Chung Chiang, Kuo-Hsiang Hung, Tzen-Yuh Chiang, and Barbara A. Schaal. PNAS 103(25): 9578;8211;9583 (June 20, 2006)

Theme 2
Invasion of weedy rice in rice fields in Thailand: problems and management. By Chanya Maneechote, Sansanee Jamjod and Benjavan Rerkasem. International Rice Research Notes 29(2): 14-16. (December 2004)

Theme 3
Varietal Turnover and Seed Exchange: Implications for Conservation of Rice Genetic Diversity On-Farm (Awarded first prize in Genetic Resource Category for the International Year of Rice). By Anothai Sirabanchongkran, Kanok Rerkasem, Narit Yimyam, Warapong Boonma, Kevin Coffey, Miguel Pinedo-Vasquez and Christine Padoch. International Rice Research Notes 29(2): 18-20. (December 2004)

»The goals
To develop strategies to improve the productivity of traditional rice cropping systems that are compatible with in situ conservation of rice genetic diversity; to develop the interdisciplinary capacity to accomplish this within and near the centre of rice genetic diversity in Cambodia, Laos, and Thailand.

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Measuring the effect of iron toxicity, Vientiane, Laos.

Project impact

Weedy rice is emerging as a serious threat to rice farming in Asia. Its invasiveness enhanced by several recent changes in the rice production system. Farmers' fields can be overtaken, and their crops rendered valueless, within three to four crops after an initial invasion. The Rice biodiversity (Southeast Asia) project team has conclusively shown that weedy rice is the product of hybridization between cultivated rice (Oryza sativa) and its ubiquitous wild relative (O. rufipogon). The team has developed strategies for the integrated management of weedy rice. They have demonstrated the effectiveness of these strategies with local farmer cooperators and have made the information available on a national scale.

In response to rising labor cost that comes with Asia's economic growth, direct seeding is rapidly replacing transplanting. Mechanical harvesters spread weedy rice seed over long distances as well as from field to field. Instead of flowering and producing seed once a year like traditional rice varieties and local wild rice, weedy rice produces seed year round just like photoperiod insensitive modern rice varieties. Weedy rice therefore propagates every time a rice crop is grown, which may be as often as five to seven times in two years in Asia's irrigated and most productive rice land. Weedy rice is formidably noxious as it seems to have inherited the high reproductive capacity from modern rice varieties, and seed shattering and dormancy of wild rice, which contribute towards build up and persistence of its seed bank in the soil.

As the degree of weedy rice infestation increases, rice yield declines in direct proportion: farmers lose 1.1% of yield for every 1% increase in infestation. Although the effect on yield at low level infestation of 5-15% may be imperceptible, contamination of red rice, crumbly endosperm and spikelets with awn or off-type shape, size or color may all result in price deduction. By the time infestation reaches 40%, yield is about halved, and with 80-90% infestation the entire crop is lost.

From light infestation of 5-10%, farmers who carry on with routine crop management, which includes application of selective rice herbicides, find their fields completely taken over by weedy rice within three to four crops.

Research from the CCRP's Thai Rice Biodiversity project has contributed to understanding in biology and ecology of weedy rice, and how these interact with farmers' management of the rice crop to influence invasiveness. A suite of management practices has been developed, based on this understanding and in collaboration with farmers, for integrated control of weedy rice. Through these, the project has made impact on rice farming in Thailand at two levels. First is direct impact on the reduction of losses in rice yield due to weedy rice for collaborating farmers in Kao Sam Sib Harb, Kanchanaburi, and their neighbours in the same and nearby villages and provinces. Second is Thailand's national rice research system.

In the neighborhood of Kao Sam Sib Harb, modern high yielding rice varieties are grown twice a year with irrigation high inputs; yields without the weedy rice average about six tons per hectare per crop. Through project intervention, farmers now are able to keep the weedy rice under control and prevent the yield loss. Understanding of the key biological and ecological processes and crop management practices important to weedy rice control is being integrated into the local knowledge base about rice farming. For example, farmers are now aware that weedy rice seed can be transferred into their own fields from a neighbor's heavily infested field by the combined harvester or in seed contaminated with weedy rice. They know that weedy rice seed is unlike cultivated rice seed in that it becomes viable even while in milky stage and can stay viable for a long time buried in the soil and mud. It is now also common knowledge in the area that it takes only three to four crops for a few panicles of weedy rice per m2 to take over the entire field. Malai Semtap, a Kao Sam Sib Harb collaborating farmer, said "When there were just a few of them (weedy rice panicles), I sat around twiddling my toes. Suddenly the crop is overwhelmed. We really need to control the weedy rice even when it looks quite harmless."

The project is responsible for weedy rice being recognized as a national problem, and our contribution in biological and ecological understanding provides the basis for research and extension initiatives to control it from the public (Plant Protection Research and Development Office of the Department of Agriculture and Department of Agricultural Extension) private sector. The emergence of weedy rice, reinforced by the project's results in explaining the role of cultivated and wild rice hybridisation, is also beginning to be perceived as the context in which transgenic and other genetic manipulation of rice are to be evaluated. We have been requested to provide technical information on potential impact of transgenic rice on the local rice germplasm, including wild and weedy rice in two national forums.

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The project team at Chiang Mai University put on a poster display in the garden.

Investigators

»Partner institutions

»Investigators at CMU (*=project leader)

Benjavan Rerkasem*
Kanok Rerkasem
Sansanee Jamjod
Chanya Maneechote
Amena Prommin
Anothai Sirabanchongkran
Ariya Paokrueng
Athitya Suta
Anupong Wongtamee
Ayut Kongpan
Chanakan Prom-u-thai
Chopetch Saenchai
Chonticha Tawilprai


Janjira Mongon
Jumnian Wongmo
Kwanchanok Patison
Nattinee Phattarakul
Napat Somkual
Narit Yimyam
Panomwan Boonchuay
Pennapa Jaksomsak
Prateep Oupkeaw
Rataya Yanaphan
Ronnachit Jindalouang
Saengdao Kittiworawat


Sawika Konsaeng
Suthipong Jindaluang
Sithichai Lordkaew
Suwanee Laenoi
Sunisa Niruntrayakul
Somchit Youpensuk
Therdsak Anakad
Tonapha Pusadee
Utumporn Chaiwong
Wachira Porchit
Wilailak Sommut

»Investigators at LARC

Kongpanh Kanyavong
Chay Bounphanousay
Khamla Phanthaboun

Khemkham Hongphakdy
Phoumi Inthapanya

Singty Voradeth
Vilaphong Kanyasone

»Investigators at CARDI

Ouk Makara
Chou Vichet
Leng Lay Hout

Sakhan Sophany
Say Puthea
Seang Lay Heng

 

»Investigators at New York Botanical Garden
Christine Padoch

»Investigators at Columbia University
Miguel Pinedo-Vasquez
Kevin Coffey

»Investigators at Washington University
Barbara Schaal

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Annual progress reports

Click the links below for annual progress reports.

»Original grant

Year 1 (12/2001-11/2002)
English

Year 2 (12/2002-11/2003)
English

Year 3 (12/2003-11/2004)
English

Year 4 (12/2004-11/2005)
English

 

»First renewal

Year 5 (12/2005-11/2006)
English

Year 6 (12/2006-11/2007)
English

Year 7 (12/2007-11/2008)
English

Year 8 (12/2008-11/2009)
Due 12/31/2009

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Publications

CCRP supported publications
File date: 4/26/2007

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© McKnight Foundation Collaborative Crop Research Program.